API Documentation¶
Read / write access to some common neuroimaging file formats |
File Formats¶
Read / write access to the basic Mayo Analyze format |
|
Read / write access to SPM2 version of analyze image format |
|
Read / write access to SPM99 version of analyze image format |
|
CIFTI-2 format IO |
|
GIfTI format IO |
|
Reading functions for freesurfer files |
|
Read MINC1 format images |
|
Preliminary MINC2 support |
|
DICOM reader |
|
Read / write access to NIfTI1 image format |
|
Read / write access to NIfTI2 image format |
|
Read ECAT format images |
|
Read images in PAR/REC format. |
|
Multiformat-capable streamline format read / write interface |
|
Read and write trackvis files (old interface) |
Image Utilities¶
Module implementing Euler angle rotations and their conversions |
|
Processor functions for images |
|
Define supported image classes and names |
|
Defaults for images and headers |
|
Utilities to load and save image objects |
|
Utilities for calculating and applying affine orientations |
|
Functions to operate on, or return, quaternions. |
|
A simple spatial image class |
|
Utility functions for analyze-like formats |
Float / integer conversion¶
Array writer objects |
|
Utilties for casting numpy values in various ways |
System utilities¶
Utilities to find files from NIPY data packages |
|
Settings from the system environment relevant to NIPY |
Miscellaneous Helpers¶
Array proxy base class |
|
Utility routines for working with points and affine transforms |
|
Battery runner classes and Report classes |
|
Utilities to find files from NIPY data packages |
|
DICOM filesystem tools |
|
Fileholder class |
|
Create filename pairs, triplets etc, with expected extensions |
|
Utilities for getting array slices out of file-like objects |
|
Descriptor support for NIPY. |
|
Context manager openers for various fileobject types |
|
Routines to support optional packages |
|
ReStructured Text utilities |
|
Contexts for with statement providing temporary directories |
|
Class to raise error for missing modules or other misfortunes |
|
Class to wrap numpy structured array |
Alphabetical API reference¶
- API Reference
- nibabel
_h5py_compat
_version
- nibabel.affines
- nibabel.analyze
- nibabel.arrayproxy
- nibabel.arraywriters
- nibabel.batteryrunners
benchmarks
brikhead
- nibabel.casting
- nibabel.cifti2
cmdline
- nibabel.data
dataobj_images
deprecated
deprecator
- nibabel.dft
- nibabel.ecat
- nibabel.environment
- nibabel.eulerangles
filebasedimages
- nibabel.fileholders
- nibabel.filename_parser
- nibabel.fileslice
fileutils
- nibabel.freesurfer
- nibabel.funcs
- nibabel.gifti
- nibabel.imageclasses
- nibabel.imageglobals
imagestats
keywordonly
- nibabel.loadsave
- nibabel.minc1
- nibabel.minc2
mriutils
- nibabel.nicom
- nibabel.nifti1
- nibabel.nifti2
- nibabel.onetime
- nibabel.openers
- nibabel.optpkg
- nibabel.orientations
- nibabel.parrec
processing
pydicom_compat
- nibabel.quaternions
- nibabel.rstutils
spaces
- nibabel.spatialimages
- nibabel.spm2analyze
- nibabel.spm99analyze
- nibabel.streamlines
- nibabel.tmpdirs
- nibabel.trackvis
- nibabel.tripwire
viewers
- nibabel.volumeutils
- nibabel.wrapstruct
xmlutils