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Package csb :: Package bio :: Package io :: Module procheck :: Class ProcheckParser
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Class ProcheckParser

source code

Simple Prochceck Summary parser

Instance Methods
 
__init__(self) source code
 
parse(self, fn)
Returns: dicttionary of parsed quality indicatiors		 source code
 
run(self, pdb_file)
Runs procheck for the given pdbfile and parses the output.		 source code
Method Details

parse(self, fn)

source code 
Parameters:
  • fn (str) - source file to parse
Returns:
dicttionary of parsed quality indicatiors

run(self, pdb_file)

source code 

Runs procheck for the given pdbfile and parses the output. Will fail if the procheck binary is not in the path.

Parameters:
  • pdb_file - file to parse
Returns:
dict of parsed values

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