Package org.jmol.adapter.readers.pymol
Class PyMOL
java.lang.Object
org.jmol.adapter.readers.pymol.PyMOL
PyMOL settings and constants.
see http://sourceforge.net/projects/pymol/files/pymol/
Settings: http://sourceforge.net/p/pymol/code/4025/tree/trunk/pymol/layer1/Setting.h
Colors: http://sourceforge.net/p/pymol/code/4008/tree/trunk/pymol/layer1/Color.c
Colors there are created on the fly. The colors here were derived from Color.pm
(Roni Gordon, via Jaime Prilusky, Jan 2013)
with note therein:
for i in cmd.get_color_indices(1):
print>>fp, (
( i[1], i[0], ( int( cmd.get_color_tuple(i[0])[0]*255 ),
int( cmd.get_color_tuple(i[0])[1]*255 ),
int(cmd.get_color_tuple(i[0])[2]*255 )
)
)
);
which I then turned into the list below using Excel.
I assume there are also custom colors that need to be considered; we are not doing that here yet.
-- Bob Hanson, Feb 2013
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Field Summary
FieldsModifier and TypeFieldDescription(package private) static final int
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescription(package private) static void
(package private) static float
getDefaultSetting
(int i, int pymolVersion) All settings that Jmol uses should go here(package private) static javajs.util.P3
getDefaultSettingPt
(int i, int pymolVersion, javajs.util.P3 pt) (package private) static String
getDefaultSettingS
(int i, int pymolVersion) (package private) static int
getRGB
(int color) (package private) static int[]
getVArray
(int version) (package private) static int[]
getVArrayB
(int version)
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Field Details
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OBJECT_SELECTION
static final int OBJECT_SELECTION- See Also:
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OBJECT_MOLECULE
static final int OBJECT_MOLECULE- See Also:
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OBJECT_MAPDATA
static final int OBJECT_MAPDATA- See Also:
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OBJECT_MAPMESH
static final int OBJECT_MAPMESH- See Also:
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OBJECT_MEASURE
static final int OBJECT_MEASURE- See Also:
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OBJECT_CALLBACK
static final int OBJECT_CALLBACK- See Also:
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OBJECT_CGO
static final int OBJECT_CGO- See Also:
-
OBJECT_SURFACE
static final int OBJECT_SURFACE- See Also:
-
OBJECT_GADGET
static final int OBJECT_GADGET- See Also:
-
OBJECT_CALCULATOR
static final int OBJECT_CALCULATOR- See Also:
-
OBJECT_SLICE
static final int OBJECT_SLICE- See Also:
-
OBJECT_ALIGNMENT
static final int OBJECT_ALIGNMENT- See Also:
-
OBJECT_GROUP
static final int OBJECT_GROUP- See Also:
-
REP_LIST
-
REP_STICKS
static final int REP_STICKS- See Also:
-
REP_SPHERES
static final int REP_SPHERES- See Also:
-
REP_SURFACE
static final int REP_SURFACE- See Also:
-
REP_LABELS
static final int REP_LABELS- See Also:
-
REP_NBSPHERES
static final int REP_NBSPHERES- See Also:
-
REP_CARTOON
static final int REP_CARTOON- See Also:
-
REP_RIBBON
static final int REP_RIBBON- See Also:
-
REP_LINES
static final int REP_LINES- See Also:
-
REP_MESH
static final int REP_MESH- See Also:
-
REP_DOTS
static final int REP_DOTS- See Also:
-
REP_DASHES
static final int REP_DASHES- See Also:
-
REP_NONBONDED
static final int REP_NONBONDED- See Also:
-
REP_CELL
static final int REP_CELL- See Also:
-
REP_CGO
static final int REP_CGO- See Also:
-
REP_CALLBACK
static final int REP_CALLBACK- See Also:
-
REP_EXTENT
static final int REP_EXTENT- See Also:
-
REP_SLICE
static final int REP_SLICE- See Also:
-
REP_ANGLES
static final int REP_ANGLES- See Also:
-
REP_DIHEDRALS
static final int REP_DIHEDRALS- See Also:
-
REP_ELLIPSOID
static final int REP_ELLIPSOID- See Also:
-
REP_VOLUME
static final int REP_VOLUME- See Also:
-
REP_MAX
static final int REP_MAX- See Also:
-
REP_JMOL_TRACE
static final int REP_JMOL_TRACE- See Also:
-
REP_JMOL_PUTTY
static final int REP_JMOL_PUTTY- See Also:
-
REP_JMOL_MAX
static final int REP_JMOL_MAX- See Also:
-
FLAG_exfoliate
static int FLAG_exfoliate -
FLAG_ignore
static int FLAG_ignore -
FLAG_no_smooth
static int FLAG_no_smooth -
FLAG_polymer
static int FLAG_polymer -
FLAG_solvent
static int FLAG_solvent -
FLAG_organic
static int FLAG_organic -
FLAG_inorganic
static int FLAG_inorganic -
FLAG_NOSURFACE
static int FLAG_NOSURFACE -
active_selections
static final int active_selections- See Also:
-
alignment_as_cylinders
static final int alignment_as_cylinders- See Also:
-
all_states
static final int all_states- See Also:
-
ambient
static final int ambient- See Also:
-
ambient_occlusion_mode
static final int ambient_occlusion_mode- See Also:
-
ambient_occlusion_scale
static final int ambient_occlusion_scale- See Also:
-
ambient_occlusion_smooth
static final int ambient_occlusion_smooth- See Also:
-
anaglyph_mode
static final int anaglyph_mode- See Also:
-
angle_color
static final int angle_color- See Also:
-
angle_label_position
static final int angle_label_position- See Also:
-
angle_size
static final int angle_size- See Also:
-
animation
static final int animation- See Also:
-
animation_duration
static final int animation_duration- See Also:
-
antialias
static final int antialias- See Also:
-
async_builds
static final int async_builds- See Also:
-
ati_bugs
static final int ati_bugs- See Also:
-
atom_name_wildcard
static final int atom_name_wildcard- See Also:
-
atom_type_format
static final int atom_type_format- See Also:
-
auto_classify_atoms
static final int auto_classify_atoms- See Also:
-
auto_color
static final int auto_color- See Also:
-
auto_color_next
static final int auto_color_next- See Also:
-
auto_copy_images
static final int auto_copy_images- See Also:
-
auto_defer_atom_count
static final int auto_defer_atom_count- See Also:
-
auto_defer_builds
static final int auto_defer_builds- See Also:
-
auto_dss
static final int auto_dss- See Also:
-
auto_hide_selections
static final int auto_hide_selections- See Also:
-
auto_indicate_flags
static final int auto_indicate_flags- See Also:
-
auto_number_selections
static final int auto_number_selections- See Also:
-
auto_overlay
static final int auto_overlay- See Also:
-
auto_remove_hydrogens
static final int auto_remove_hydrogens- See Also:
-
auto_rename_duplicate_objects
static final int auto_rename_duplicate_objects- See Also:
-
auto_sculpt
static final int auto_sculpt- See Also:
-
auto_show_lines
static final int auto_show_lines- See Also:
-
auto_show_nonbonded
static final int auto_show_nonbonded- See Also:
-
auto_show_selections
static final int auto_show_selections- See Also:
-
auto_show_spheres
static final int auto_show_spheres- See Also:
-
auto_zoom
static final int auto_zoom- See Also:
-
autoclose_dialogs
static final int autoclose_dialogs- See Also:
-
backface_cull
static final int backface_cull- See Also:
-
batch_prefix
static final int batch_prefix- See Also:
-
bg_gradient
static final int bg_gradient- See Also:
-
bg_image_filename
static final int bg_image_filename- See Also:
-
bg_image_mode
static final int bg_image_mode- See Also:
-
bg_image_tilesize
static final int bg_image_tilesize- See Also:
-
bg_image_linear
static final int bg_image_linear- See Also:
-
bg_rgb
static final int bg_rgb- See Also:
-
bg_rgb_bottom
static final int bg_rgb_bottom- See Also:
-
bg_rgb_top
static final int bg_rgb_top- See Also:
-
bonding_vdw_cutoff
static final int bonding_vdw_cutoff- See Also:
-
button_mode
static final int button_mode- See Also:
-
button_mode_name
static final int button_mode_name- See Also:
-
cache_display
static final int cache_display- See Also:
-
cache_frames
static final int cache_frames- See Also:
-
cache_max
static final int cache_max- See Also:
-
cache_memory
static final int cache_memory- See Also:
-
cache_mode
static final int cache_mode- See Also:
-
cartoon_color
static final int cartoon_color- See Also:
-
cartoon_cylindrical_helices
static final int cartoon_cylindrical_helices- See Also:
-
cartoon_debug
static final int cartoon_debug- See Also:
-
cartoon_discrete_colors
static final int cartoon_discrete_colors- See Also:
-
cartoon_dumbbell_length
static final int cartoon_dumbbell_length- See Also:
-
cartoon_dumbbell_radius
static final int cartoon_dumbbell_radius- See Also:
-
cartoon_dumbbell_width
static final int cartoon_dumbbell_width- See Also:
-
cartoon_fancy_helices
static final int cartoon_fancy_helices- See Also:
-
cartoon_fancy_sheets
static final int cartoon_fancy_sheets- See Also:
-
cartoon_flat_cycles
static final int cartoon_flat_cycles- See Also:
-
cartoon_flat_sheets
static final int cartoon_flat_sheets- See Also:
-
cartoon_helix_radius
static final int cartoon_helix_radius- See Also:
-
cartoon_highlight_color
static final int cartoon_highlight_color- See Also:
-
cartoon_ladder_color
static final int cartoon_ladder_color- See Also:
-
cartoon_ladder_mode
static final int cartoon_ladder_mode- See Also:
-
cartoon_ladder_radius
static final int cartoon_ladder_radius- See Also:
-
cartoon_loop_cap
static final int cartoon_loop_cap- See Also:
-
cartoon_loop_quality
static final int cartoon_loop_quality- See Also:
-
cartoon_loop_radius
static final int cartoon_loop_radius- See Also:
-
cartoon_nucleic_acid_as_cylinders
static final int cartoon_nucleic_acid_as_cylinders- See Also:
-
cartoon_nucleic_acid_color
static final int cartoon_nucleic_acid_color- See Also:
-
cartoon_nucleic_acid_mode
static final int cartoon_nucleic_acid_mode- See Also:
-
cartoon_oval_length
static final int cartoon_oval_length- See Also:
-
cartoon_oval_quality
static final int cartoon_oval_quality- See Also:
-
cartoon_oval_width
static final int cartoon_oval_width- See Also:
-
cartoon_power
static final int cartoon_power- See Also:
-
cartoon_power_b
static final int cartoon_power_b- See Also:
-
cartoon_putty_quality
static final int cartoon_putty_quality- See Also:
-
cartoon_putty_radius
static final int cartoon_putty_radius- See Also:
-
cartoon_putty_range
static final int cartoon_putty_range- See Also:
-
cartoon_putty_scale_max
static final int cartoon_putty_scale_max- See Also:
-
cartoon_putty_scale_min
static final int cartoon_putty_scale_min- See Also:
-
cartoon_putty_scale_power
static final int cartoon_putty_scale_power- See Also:
-
cartoon_putty_transform
static final int cartoon_putty_transform- See Also:
-
cartoon_rect_length
static final int cartoon_rect_length- See Also:
-
cartoon_rect_width
static final int cartoon_rect_width- See Also:
-
cartoon_refine
static final int cartoon_refine- See Also:
-
cartoon_refine_normals
static final int cartoon_refine_normals- See Also:
-
cartoon_refine_tips
static final int cartoon_refine_tips- See Also:
-
cartoon_ring_color
static final int cartoon_ring_color- See Also:
-
cartoon_ring_finder
static final int cartoon_ring_finder- See Also:
-
cartoon_ring_mode
static final int cartoon_ring_mode- See Also:
-
cartoon_ring_radius
static final int cartoon_ring_radius- See Also:
-
cartoon_ring_transparency
static final int cartoon_ring_transparency- See Also:
-
cartoon_ring_width
static final int cartoon_ring_width- See Also:
-
cartoon_round_helices
static final int cartoon_round_helices- See Also:
-
cartoon_sampling
static final int cartoon_sampling- See Also:
-
cartoon_side_chain_helper
static final int cartoon_side_chain_helper- See Also:
-
cartoon_smooth_cycles
static final int cartoon_smooth_cycles- See Also:
-
cartoon_smooth_first
static final int cartoon_smooth_first- See Also:
-
cartoon_smooth_last
static final int cartoon_smooth_last- See Also:
-
cartoon_smooth_loops
static final int cartoon_smooth_loops- See Also:
-
cartoon_throw
static final int cartoon_throw- See Also:
-
cartoon_trace_atoms
static final int cartoon_trace_atoms- See Also:
-
cartoon_transparency
static final int cartoon_transparency- See Also:
-
cartoon_tube_cap
static final int cartoon_tube_cap- See Also:
-
cartoon_tube_quality
static final int cartoon_tube_quality- See Also:
-
cartoon_tube_radius
static final int cartoon_tube_radius- See Also:
-
cartoon_use_shader
static final int cartoon_use_shader- See Also:
-
cavity_cull
static final int cavity_cull- See Also:
-
cgo_debug
static final int cgo_debug- See Also:
-
cgo_dot_radius
static final int cgo_dot_radius- See Also:
-
cgo_dot_width
static final int cgo_dot_width- See Also:
-
cgo_ellipsoid_quality
static final int cgo_ellipsoid_quality- See Also:
-
cgo_lighting
static final int cgo_lighting- See Also:
-
cgo_line_radius
static final int cgo_line_radius- See Also:
-
cgo_line_width
static final int cgo_line_width- See Also:
-
cgo_ray_width_scale
static final int cgo_ray_width_scale- See Also:
-
cgo_shader_ub_color
static final int cgo_shader_ub_color- See Also:
-
cgo_shader_ub_flags
static final int cgo_shader_ub_flags- See Also:
-
cgo_shader_ub_normal
static final int cgo_shader_ub_normal- See Also:
-
cgo_sphere_quality
static final int cgo_sphere_quality- See Also:
-
cgo_transparency
static final int cgo_transparency- See Also:
-
cgo_use_shader
static final int cgo_use_shader- See Also:
-
clamp_colors
static final int clamp_colors- See Also:
-
clean_electro_mode
static final int clean_electro_mode- See Also:
-
cone_quality
static final int cone_quality- See Also:
-
connect_bonded
static final int connect_bonded- See Also:
-
connect_cutoff
static final int connect_cutoff- See Also:
-
connect_mode
static final int connect_mode- See Also:
-
coulomb_cutoff
static final int coulomb_cutoff- See Also:
-
coulomb_dielectric
static final int coulomb_dielectric- See Also:
-
coulomb_units_factor
static final int coulomb_units_factor- See Also:
-
cull_spheres
static final int cull_spheres- See Also:
-
cylinder_shader_ff_workaround
static final int cylinder_shader_ff_workaround- See Also:
-
cylinders_shader_filter_faces
static final int cylinders_shader_filter_faces- See Also:
-
dash_as_cylinders
static final int dash_as_cylinders- See Also:
-
dash_color
static final int dash_color- See Also:
-
dash_gap
static final int dash_gap- See Also:
-
dash_length
static final int dash_length- See Also:
-
dash_radius
static final int dash_radius- See Also:
-
dash_round_ends
static final int dash_round_ends- See Also:
-
dash_use_shader
static final int dash_use_shader- See Also:
-
dash_width
static final int dash_width- See Also:
-
debug_pick
static final int debug_pick- See Also:
-
default_2fofc_map_rep
static final int default_2fofc_map_rep- See Also:
-
default_buster_names
static final int default_buster_names- See Also:
-
default_fofc_map_rep
static final int default_fofc_map_rep- See Also:
-
default_phenix_names
static final int default_phenix_names- See Also:
-
default_phenix_no_fill_names
static final int default_phenix_no_fill_names- See Also:
-
default_refmac_names
static final int default_refmac_names- See Also:
-
defer_builds_mode
static final int defer_builds_mode- See Also:
-
defer_updates
static final int defer_updates- See Also:
-
depth_cue
static final int depth_cue- See Also:
-
dihedral_color
static final int dihedral_color- See Also:
-
dihedral_label_position
static final int dihedral_label_position- See Also:
-
dihedral_size
static final int dihedral_size- See Also:
-
direct
static final int direct- See Also:
-
dist_counter
static final int dist_counter- See Also:
-
distance_exclusion
static final int distance_exclusion- See Also:
-
dot_as_spheres
static final int dot_as_spheres- See Also:
-
dot_color
static final int dot_color- See Also:
-
dot_density
static final int dot_density- See Also:
-
dot_hydrogens
static final int dot_hydrogens- See Also:
-
dot_lighting
static final int dot_lighting- See Also:
-
dot_mode
static final int dot_mode- See Also:
-
dot_normals
static final int dot_normals- See Also:
-
dot_radius
static final int dot_radius- See Also:
-
dot_solvent
static final int dot_solvent- See Also:
-
dot_use_shader
static final int dot_use_shader- See Also:
-
dot_width
static final int dot_width- See Also:
-
draw_frames
static final int draw_frames- See Also:
-
draw_mode
static final int draw_mode- See Also:
-
dump_binary
static final int dump_binary- See Also:
-
dynamic_measures
static final int dynamic_measures- See Also:
-
dynamic_width
static final int dynamic_width- See Also:
-
dynamic_width_factor
static final int dynamic_width_factor- See Also:
-
dynamic_width_max
static final int dynamic_width_max- See Also:
-
dynamic_width_min
static final int dynamic_width_min- See Also:
-
edit_light
static final int edit_light- See Also:
-
editor_auto_dihedral
static final int editor_auto_dihedral- See Also:
-
editor_auto_origin
static final int editor_auto_origin- See Also:
-
editor_bond_cycle_mode
static final int editor_bond_cycle_mode- See Also:
-
editor_label_fragments
static final int editor_label_fragments- See Also:
-
ellipsoid_color
static final int ellipsoid_color- See Also:
-
ellipsoid_probability
static final int ellipsoid_probability- See Also:
-
ellipsoid_quality
static final int ellipsoid_quality- See Also:
-
ellipsoid_scale
static final int ellipsoid_scale- See Also:
-
ellipsoid_transparency
static final int ellipsoid_transparency- See Also:
-
excl_display_lists_shaders
static final int excl_display_lists_shaders- See Also:
-
fast_idle
static final int fast_idle- See Also:
-
fetch_host
static final int fetch_host- See Also:
-
fetch_path
static final int fetch_path- See Also:
-
field_of_view
static final int field_of_view- See Also:
-
fit_iterations
static final int fit_iterations- See Also:
-
fit_kabsch
static final int fit_kabsch- See Also:
-
fit_tolerance
static final int fit_tolerance- See Also:
-
float_labels
static final int float_labels- See Also:
-
fog
static final int fog- See Also:
-
fog_start
static final int fog_start- See Also:
-
frame
static final int frame- See Also:
-
full_screen
static final int full_screen- See Also:
-
gamma
static final int gamma- See Also:
-
gaussian_b_adjust
static final int gaussian_b_adjust- See Also:
-
gaussian_b_floor
static final int gaussian_b_floor- See Also:
-
gaussian_resolution
static final int gaussian_resolution- See Also:
-
geometry_export_mode
static final int geometry_export_mode- See Also:
-
gl_ambient
static final int gl_ambient- See Also:
-
gradient_max_length
static final int gradient_max_length- See Also:
-
gradient_min_length
static final int gradient_min_length- See Also:
-
gradient_min_slope
static final int gradient_min_slope- See Also:
-
gradient_normal_min_dot
static final int gradient_normal_min_dot- See Also:
-
gradient_spacing
static final int gradient_spacing- See Also:
-
gradient_step_size
static final int gradient_step_size- See Also:
-
gradient_symmetry
static final int gradient_symmetry- See Also:
-
grid_max
static final int grid_max- See Also:
-
grid_mode
static final int grid_mode- See Also:
-
grid_slot
static final int grid_slot- See Also:
-
group_arrow_prefix
static final int group_arrow_prefix- See Also:
-
group_auto_mode
static final int group_auto_mode- See Also:
-
group_full_member_names
static final int group_full_member_names- See Also:
-
h_bond_cone
static final int h_bond_cone- See Also:
-
h_bond_cutoff_center
static final int h_bond_cutoff_center- See Also:
-
h_bond_cutoff_edge
static final int h_bond_cutoff_edge- See Also:
-
h_bond_exclusion
static final int h_bond_exclusion- See Also:
-
h_bond_from_proton
static final int h_bond_from_proton- See Also:
-
h_bond_max_angle
static final int h_bond_max_angle- See Also:
-
h_bond_power_a
static final int h_bond_power_a- See Also:
-
h_bond_power_b
static final int h_bond_power_b- See Also:
-
half_bonds
static final int half_bonds- See Also:
-
hash_max
static final int hash_max- See Also:
-
heavy_neighbor_cutoff
static final int heavy_neighbor_cutoff- See Also:
-
hide_long_bonds
static final int hide_long_bonds- See Also:
-
hide_underscore_names
static final int hide_underscore_names- See Also:
-
idle_delay
static final int idle_delay- See Also:
-
ignore_case
static final int ignore_case- See Also:
-
ignore_pdb_segi
static final int ignore_pdb_segi- See Also:
-
image_copy_always
static final int image_copy_always- See Also:
-
image_dots_per_inch
static final int image_dots_per_inch- See Also:
-
INIT
static final int INIT- See Also:
-
internal_feedback
static final int internal_feedback- See Also:
-
internal_gui
static final int internal_gui- See Also:
-
internal_gui_control_size
static final int internal_gui_control_size- See Also:
-
internal_gui_mode
static final int internal_gui_mode- See Also:
-
internal_gui_width
static final int internal_gui_width- See Also:
-
internal_prompt
static final int internal_prompt- See Also:
-
isomesh_auto_state
static final int isomesh_auto_state- See Also:
-
keep_alive
static final int keep_alive- See Also:
-
label_anchor
static final int label_anchor- See Also:
-
label_angle_digits
static final int label_angle_digits- See Also:
-
label_color
static final int label_color- See Also:
-
label_digits
static final int label_digits- See Also:
-
label_dihedral_digits
static final int label_dihedral_digits- See Also:
-
label_distance_digits
static final int label_distance_digits- See Also:
-
label_font_id
static final int label_font_id- See Also:
-
label_outline_color
static final int label_outline_color- See Also:
-
label_position
static final int label_position- See Also:
-
label_shadow_mode
static final int label_shadow_mode- See Also:
-
label_size
static final int label_size- See Also:
-
legacy_mouse_zoom
static final int legacy_mouse_zoom- See Also:
-
legacy_vdw_radii
static final int legacy_vdw_radii- See Also:
-
light
static final int light- See Also:
-
light_count
static final int light_count- See Also:
-
light2
static final int light2- See Also:
-
light3
static final int light3- See Also:
-
light4
static final int light4- See Also:
-
light5
static final int light5- See Also:
-
light6
static final int light6- See Also:
-
light7
static final int light7- See Also:
-
light8
static final int light8- See Also:
-
light9
static final int light9- See Also:
-
line_as_cylinders
static final int line_as_cylinders- See Also:
-
line_color
static final int line_color- See Also:
-
line_radius
static final int line_radius- See Also:
-
line_smooth
static final int line_smooth- See Also:
-
line_stick_helper
static final int line_stick_helper- See Also:
-
line_use_shader
static final int line_use_shader- See Also:
-
line_width
static final int line_width- See Also:
-
log_box_selections
static final int log_box_selections- See Also:
-
log_conformations
static final int log_conformations- See Also:
-
logging
static final int logging- See Also:
-
map_auto_expand_sym
static final int map_auto_expand_sym- See Also:
-
matrix_mode
static final int matrix_mode- See Also:
-
max_threads
static final int max_threads- See Also:
-
max_triangles
static final int max_triangles- See Also:
-
max_ups
static final int max_ups- See Also:
-
mesh_as_cylinders
static final int mesh_as_cylinders- See Also:
-
mesh_carve_cutoff
static final int mesh_carve_cutoff- See Also:
-
mesh_carve_selection
static final int mesh_carve_selection- See Also:
-
mesh_carve_state
static final int mesh_carve_state- See Also:
-
mesh_clear_cutoff
static final int mesh_clear_cutoff- See Also:
-
mesh_clear_selection
static final int mesh_clear_selection- See Also:
-
mesh_clear_state
static final int mesh_clear_state- See Also:
-
mesh_color
static final int mesh_color- See Also:
-
mesh_cutoff
static final int mesh_cutoff- See Also:
-
mesh_grid_max
static final int mesh_grid_max- See Also:
-
mesh_lighting
static final int mesh_lighting- See Also:
-
mesh_mode
static final int mesh_mode- See Also:
-
mesh_negative_color
static final int mesh_negative_color- See Also:
-
mesh_negative_visible
static final int mesh_negative_visible- See Also:
-
mesh_normals
static final int mesh_normals- See Also:
-
mesh_quality
static final int mesh_quality- See Also:
-
mesh_radius
static final int mesh_radius- See Also:
-
mesh_skip
static final int mesh_skip- See Also:
-
mesh_solvent
static final int mesh_solvent- See Also:
-
mesh_type
static final int mesh_type- See Also:
-
mesh_use_shader
static final int mesh_use_shader- See Also:
-
mesh_width
static final int mesh_width- See Also:
-
min_mesh_spacing
static final int min_mesh_spacing- See Also:
-
moe_separate_chains
static final int moe_separate_chains- See Also:
-
motion_bias
static final int motion_bias- See Also:
-
motion_hand
static final int motion_hand- See Also:
-
motion_linear
static final int motion_linear- See Also:
-
motion_power
static final int motion_power- See Also:
-
motion_simple
static final int motion_simple- See Also:
-
mouse_grid
static final int mouse_grid- See Also:
-
mouse_limit
static final int mouse_limit- See Also:
-
mouse_restart_movie_delay
static final int mouse_restart_movie_delay- See Also:
-
mouse_scale
static final int mouse_scale- See Also:
-
mouse_selection_mode
static final int mouse_selection_mode- See Also:
-
mouse_wheel_scale
static final int mouse_wheel_scale- See Also:
-
mouse_z_scale
static final int mouse_z_scale- See Also:
-
movie_animate_by_frame
static final int movie_animate_by_frame- See Also:
-
movie_auto_interpolate
static final int movie_auto_interpolate- See Also:
-
movie_auto_store
static final int movie_auto_store- See Also:
-
movie_delay
static final int movie_delay- See Also:
-
movie_fps
static final int movie_fps- See Also:
-
movie_loop
static final int movie_loop- See Also:
-
movie_panel
static final int movie_panel- See Also:
-
movie_panel_row_height
static final int movie_panel_row_height- See Also:
-
movie_quality
static final int movie_quality- See Also:
-
movie_rock
static final int movie_rock- See Also:
-
multiplex
static final int multiplex- See Also:
-
nb_spheres_quality
static final int nb_spheres_quality- See Also:
-
nb_spheres_size
static final int nb_spheres_size- See Also:
-
nb_spheres_use_shader
static final int nb_spheres_use_shader- See Also:
-
neighbor_cutoff
static final int neighbor_cutoff- See Also:
-
no_idle
static final int no_idle- See Also:
-
nonbonded_as_cylinders
static final int nonbonded_as_cylinders- See Also:
-
nonbonded_size
static final int nonbonded_size- See Also:
-
nonbonded_transparency
static final int nonbonded_transparency- See Also:
-
nonbonded_use_shader
static final int nonbonded_use_shader- See Also:
-
normal_workaround
static final int normal_workaround- See Also:
-
normalize_ccp4_maps
static final int normalize_ccp4_maps- See Also:
-
normalize_grd_maps
static final int normalize_grd_maps- See Also:
-
normalize_o_maps
static final int normalize_o_maps- See Also:
-
nvidia_bugs
static final int nvidia_bugs- See Also:
-
offscreen_rendering_for_antialiasing
static final int offscreen_rendering_for_antialiasing- See Also:
-
offscreen_rendering_multiplier
static final int offscreen_rendering_multiplier- See Also:
-
opaque_background
static final int opaque_background- See Also:
-
orthoscopic
static final int orthoscopic- See Also:
-
overlay
static final int overlay- See Also:
-
overlay_lines
static final int overlay_lines- See Also:
-
pdb_conect_all
static final int pdb_conect_all- See Also:
-
pdb_discrete_chains
static final int pdb_discrete_chains- See Also:
-
pdb_echo_tags
static final int pdb_echo_tags- See Also:
-
pdb_formal_charges
static final int pdb_formal_charges- See Also:
-
pdb_hetatm_guess_valences
static final int pdb_hetatm_guess_valences- See Also:
-
pdb_hetatm_sort
static final int pdb_hetatm_sort- See Also:
-
pdb_honor_model_number
static final int pdb_honor_model_number- See Also:
-
pdb_ignore_conect
static final int pdb_ignore_conect- See Also:
-
pdb_insertions_go_first
static final int pdb_insertions_go_first- See Also:
-
pdb_insure_orthogonal
static final int pdb_insure_orthogonal- See Also:
-
pdb_literal_names
static final int pdb_literal_names- See Also:
-
pdb_no_end_record
static final int pdb_no_end_record- See Also:
-
pdb_reformat_names_mode
static final int pdb_reformat_names_mode- See Also:
-
pdb_retain_ids
static final int pdb_retain_ids- See Also:
-
pdb_standard_order
static final int pdb_standard_order- See Also:
-
pdb_truncate_residue_name
static final int pdb_truncate_residue_name- See Also:
-
pdb_unbond_cations
static final int pdb_unbond_cations- See Also:
-
pdb_use_ter_records
static final int pdb_use_ter_records- See Also:
-
pickable
static final int pickable- See Also:
-
png_file_gamma
static final int png_file_gamma- See Also:
-
png_screen_gamma
static final int png_screen_gamma- See Also:
-
polar_neighbor_cutoff
static final int polar_neighbor_cutoff- See Also:
-
power
static final int power- See Also:
-
pqr_workarounds
static final int pqr_workarounds- See Also:
-
presentation
static final int presentation- See Also:
-
presentation_auto_quit
static final int presentation_auto_quit- See Also:
-
presentation_auto_start
static final int presentation_auto_start- See Also:
-
presentation_mode
static final int presentation_mode- See Also:
-
preserve_chempy_ids
static final int preserve_chempy_ids- See Also:
-
pymol_space_max_blue
static final int pymol_space_max_blue- See Also:
-
pymol_space_max_green
static final int pymol_space_max_green- See Also:
-
pymol_space_max_red
static final int pymol_space_max_red- See Also:
-
pymol_space_min_factor
static final int pymol_space_min_factor- See Also:
-
raise_exceptions
static final int raise_exceptions- See Also:
-
ramp_blend_nearby_colors
static final int ramp_blend_nearby_colors- See Also:
-
rank_assisted_sorts
static final int rank_assisted_sorts- See Also:
-
ray_blend_blue
static final int ray_blend_blue- See Also:
-
ray_blend_colors
static final int ray_blend_colors- See Also:
-
ray_blend_green
static final int ray_blend_green- See Also:
-
ray_blend_red
static final int ray_blend_red- See Also:
-
ray_clip_shadows
static final int ray_clip_shadows- See Also:
-
ray_color_ramps
static final int ray_color_ramps- See Also:
-
ray_default_renderer
static final int ray_default_renderer- See Also:
-
ray_direct_shade
static final int ray_direct_shade- See Also:
-
ray_hint_camera
static final int ray_hint_camera- See Also:
-
ray_hint_shadow
static final int ray_hint_shadow- See Also:
-
ray_improve_shadows
static final int ray_improve_shadows- See Also:
-
ray_interior_color
static final int ray_interior_color- See Also:
-
ray_interior_mode
static final int ray_interior_mode- See Also:
-
ray_interior_reflect
static final int ray_interior_reflect- See Also:
-
ray_interior_shadows
static final int ray_interior_shadows- See Also:
-
ray_interior_texture
static final int ray_interior_texture- See Also:
-
ray_label_specular
static final int ray_label_specular- See Also:
-
ray_legacy_lighting
static final int ray_legacy_lighting- See Also:
-
ray_max_passes
static final int ray_max_passes- See Also:
-
ray_opaque_background
static final int ray_opaque_background- See Also:
-
ray_orthoscopic
static final int ray_orthoscopic- See Also:
-
ray_oversample_cutoff
static final int ray_oversample_cutoff- See Also:
-
ray_pixel_scale
static final int ray_pixel_scale- See Also:
-
ray_scatter
static final int ray_scatter- See Also:
-
ray_shadow_decay_factor
static final int ray_shadow_decay_factor- See Also:
-
ray_shadow_decay_range
static final int ray_shadow_decay_range- See Also:
-
ray_shadow_fudge
static final int ray_shadow_fudge- See Also:
-
ray_shadows
static final int ray_shadows- See Also:
-
ray_spec_local
static final int ray_spec_local- See Also:
-
ray_texture
static final int ray_texture- See Also:
-
ray_texture_settings
static final int ray_texture_settings- See Also:
-
ray_trace_color
static final int ray_trace_color- See Also:
-
ray_trace_depth_factor
static final int ray_trace_depth_factor- See Also:
-
ray_trace_disco_factor
static final int ray_trace_disco_factor- See Also:
-
ray_trace_fog
static final int ray_trace_fog- See Also:
-
ray_trace_fog_start
static final int ray_trace_fog_start- See Also:
-
ray_trace_frames
static final int ray_trace_frames- See Also:
-
ray_trace_gain
static final int ray_trace_gain- See Also:
-
ray_trace_mode
static final int ray_trace_mode- See Also:
-
ray_trace_persist_cutoff
static final int ray_trace_persist_cutoff- See Also:
-
ray_trace_slope_factor
static final int ray_trace_slope_factor- See Also:
-
ray_trace_trans_cutoff
static final int ray_trace_trans_cutoff- See Also:
-
ray_transparency_contrast
static final int ray_transparency_contrast- See Also:
-
ray_transparency_oblique
static final int ray_transparency_oblique- See Also:
-
ray_transparency_oblique_power
static final int ray_transparency_oblique_power- See Also:
-
ray_transparency_shadows
static final int ray_transparency_shadows- See Also:
-
ray_transparency_spec_cut
static final int ray_transparency_spec_cut- See Also:
-
ray_transparency_specular
static final int ray_transparency_specular- See Also:
-
ray_triangle_fudge
static final int ray_triangle_fudge- See Also:
-
ray_volume
static final int ray_volume- See Also:
-
reflect
static final int reflect- See Also:
-
reflect_power
static final int reflect_power- See Also:
-
render_as_cylinders
static final int render_as_cylinders- See Also:
-
retain_order
static final int retain_order- See Also:
-
ribbon_as_cylinders
static final int ribbon_as_cylinders- See Also:
-
ribbon_color
static final int ribbon_color- See Also:
-
ribbon_nucleic_acid_mode
static final int ribbon_nucleic_acid_mode- See Also:
-
ribbon_power
static final int ribbon_power- See Also:
-
ribbon_power_b
static final int ribbon_power_b- See Also:
-
ribbon_radius
static final int ribbon_radius- See Also:
-
ribbon_sampling
static final int ribbon_sampling- See Also:
-
ribbon_side_chain_helper
static final int ribbon_side_chain_helper- See Also:
-
ribbon_smooth
static final int ribbon_smooth- See Also:
-
ribbon_throw
static final int ribbon_throw- See Also:
-
ribbon_trace_atoms
static final int ribbon_trace_atoms- See Also:
-
ribbon_transparency
static final int ribbon_transparency- See Also:
-
ribbon_use_shader
static final int ribbon_use_shader- See Also:
-
ribbon_width
static final int ribbon_width- See Also:
-
robust_logs
static final int robust_logs- See Also:
-
rock
static final int rock- See Also:
-
rock_delay
static final int rock_delay- See Also:
-
roving_byres
static final int roving_byres- See Also:
-
roving_cartoon
static final int roving_cartoon- See Also:
-
roving_delay
static final int roving_delay- See Also:
-
roving_detail
static final int roving_detail- See Also:
-
roving_isomesh
static final int roving_isomesh- See Also:
-
roving_isosurface
static final int roving_isosurface- See Also:
-
roving_labels
static final int roving_labels- See Also:
-
roving_lines
static final int roving_lines- See Also:
-
roving_map1_level
static final int roving_map1_level- See Also:
-
roving_map1_name
static final int roving_map1_name- See Also:
-
roving_map2_level
static final int roving_map2_level- See Also:
-
roving_map2_name
static final int roving_map2_name- See Also:
-
roving_map3_level
static final int roving_map3_level- See Also:
-
roving_map3_name
static final int roving_map3_name- See Also:
-
roving_nb_spheres
static final int roving_nb_spheres- See Also:
-
roving_nonbonded
static final int roving_nonbonded- See Also:
-
roving_origin
static final int roving_origin- See Also:
-
roving_origin_z
static final int roving_origin_z- See Also:
-
roving_origin_z_cushion
static final int roving_origin_z_cushion- See Also:
-
roving_polar_contacts
static final int roving_polar_contacts- See Also:
-
roving_polar_cutoff
static final int roving_polar_cutoff- See Also:
-
roving_ribbon
static final int roving_ribbon- See Also:
-
roving_selection
static final int roving_selection- See Also:
-
roving_spheres
static final int roving_spheres- See Also:
-
roving_sticks
static final int roving_sticks- See Also:
-
save_pdb_ss
static final int save_pdb_ss- See Also:
-
scene_animation
static final int scene_animation- See Also:
-
scene_animation_duration
static final int scene_animation_duration- See Also:
-
scene_buttons
static final int scene_buttons- See Also:
-
scene_buttons_mode
static final int scene_buttons_mode- See Also:
-
scene_current_name
static final int scene_current_name- See Also:
-
scene_frame_mode
static final int scene_frame_mode- See Also:
-
scene_loop
static final int scene_loop- See Also:
-
scene_restart_movie_delay
static final int scene_restart_movie_delay- See Also:
-
scenes_changed
static final int scenes_changed- See Also:
-
sculpt_angl_weight
static final int sculpt_angl_weight- See Also:
-
sculpt_auto_center
static final int sculpt_auto_center- See Also:
-
sculpt_avd_excl
static final int sculpt_avd_excl- See Also:
-
sculpt_avd_gap
static final int sculpt_avd_gap- See Also:
-
sculpt_avd_range
static final int sculpt_avd_range- See Also:
-
sculpt_avd_weight
static final int sculpt_avd_weight- See Also:
-
sculpt_bond_weight
static final int sculpt_bond_weight- See Also:
-
sculpt_field_mask
static final int sculpt_field_mask- See Also:
-
sculpt_hb_overlap
static final int sculpt_hb_overlap- See Also:
-
sculpt_hb_overlap_base
static final int sculpt_hb_overlap_base- See Also:
-
sculpt_line_weight
static final int sculpt_line_weight- See Also:
-
sculpt_max_max
static final int sculpt_max_max- See Also:
-
sculpt_max_min
static final int sculpt_max_min- See Also:
-
sculpt_max_scale
static final int sculpt_max_scale- See Also:
-
sculpt_max_weight
static final int sculpt_max_weight- See Also:
-
sculpt_memory
static final int sculpt_memory- See Also:
-
sculpt_min_max
static final int sculpt_min_max- See Also:
-
sculpt_min_min
static final int sculpt_min_min- See Also:
-
sculpt_min_scale
static final int sculpt_min_scale- See Also:
-
sculpt_min_weight
static final int sculpt_min_weight- See Also:
-
sculpt_nb_interval
static final int sculpt_nb_interval- See Also:
-
sculpt_plan_weight
static final int sculpt_plan_weight- See Also:
-
sculpt_pyra_inv_weight
static final int sculpt_pyra_inv_weight- See Also:
-
sculpt_pyra_weight
static final int sculpt_pyra_weight- See Also:
-
sculpt_tors_tolerance
static final int sculpt_tors_tolerance- See Also:
-
sculpt_tors_weight
static final int sculpt_tors_weight- See Also:
-
sculpt_tri_max
static final int sculpt_tri_max- See Also:
-
sculpt_tri_min
static final int sculpt_tri_min- See Also:
-
sculpt_tri_mode
static final int sculpt_tri_mode- See Also:
-
sculpt_tri_scale
static final int sculpt_tri_scale- See Also:
-
sculpt_tri_weight
static final int sculpt_tri_weight- See Also:
-
sculpt_vdw_scale
static final int sculpt_vdw_scale- See Also:
-
sculpt_vdw_scale14
static final int sculpt_vdw_scale14- See Also:
-
sculpt_vdw_vis_max
static final int sculpt_vdw_vis_max- See Also:
-
sculpt_vdw_vis_mid
static final int sculpt_vdw_vis_mid- See Also:
-
sculpt_vdw_vis_min
static final int sculpt_vdw_vis_min- See Also:
-
sculpt_vdw_vis_mode
static final int sculpt_vdw_vis_mode- See Also:
-
sculpt_vdw_weight
static final int sculpt_vdw_weight- See Also:
-
sculpt_vdw_weight14
static final int sculpt_vdw_weight14- See Also:
-
sculpting
static final int sculpting- See Also:
-
sculpting_cycles
static final int sculpting_cycles- See Also:
-
sdof_drag_scale
static final int sdof_drag_scale- See Also:
-
secondary_structure
static final int secondary_structure- See Also:
-
security
static final int security- See Also:
-
sel_counter
static final int sel_counter- See Also:
-
selection_overlay
static final int selection_overlay- See Also:
-
selection_round_points
static final int selection_round_points- See Also:
-
selection_visible_only
static final int selection_visible_only- See Also:
-
selection_width
static final int selection_width- See Also:
-
selection_width_max
static final int selection_width_max- See Also:
-
selection_width_scale
static final int selection_width_scale- See Also:
-
seq_view
static final int seq_view- See Also:
-
seq_view_alignment
static final int seq_view_alignment- See Also:
-
seq_view_color
static final int seq_view_color- See Also:
-
seq_view_discrete_by_state
static final int seq_view_discrete_by_state- See Also:
-
seq_view_fill_char
static final int seq_view_fill_char- See Also:
-
seq_view_fill_color
static final int seq_view_fill_color- See Also:
-
seq_view_format
static final int seq_view_format- See Also:
-
seq_view_label_color
static final int seq_view_label_color- See Also:
-
seq_view_label_mode
static final int seq_view_label_mode- See Also:
-
seq_view_label_spacing
static final int seq_view_label_spacing- See Also:
-
seq_view_label_start
static final int seq_view_label_start- See Also:
-
seq_view_location
static final int seq_view_location- See Also:
-
seq_view_overlay
static final int seq_view_overlay- See Also:
-
seq_view_unaligned_color
static final int seq_view_unaligned_color- See Also:
-
seq_view_unaligned_mode
static final int seq_view_unaligned_mode- See Also:
-
session_cache_optimize
static final int session_cache_optimize- See Also:
-
session_changed
static final int session_changed- See Also:
-
session_compression
static final int session_compression- See Also:
-
session_file
static final int session_file- See Also:
-
session_migration
static final int session_migration- See Also:
-
session_version_check
static final int session_version_check- See Also:
-
shader_path
static final int shader_path- See Also:
-
shininess
static final int shininess- See Also:
-
show_alpha_checker
static final int show_alpha_checker- See Also:
-
show_frame_rate
static final int show_frame_rate- See Also:
-
show_progress
static final int show_progress- See Also:
-
simplify_display_lists
static final int simplify_display_lists- See Also:
-
single_image
static final int single_image- See Also:
-
slice_dynamic_grid
static final int slice_dynamic_grid- See Also:
-
slice_dynamic_grid_resolution
static final int slice_dynamic_grid_resolution- See Also:
-
slice_grid
static final int slice_grid- See Also:
-
slice_height_map
static final int slice_height_map- See Also:
-
slice_height_scale
static final int slice_height_scale- See Also:
-
slice_track_camera
static final int slice_track_camera- See Also:
-
slow_idle
static final int slow_idle- See Also:
-
smooth_color_triangle
static final int smooth_color_triangle- See Also:
-
smooth_half_bonds
static final int smooth_half_bonds- See Also:
-
solvent_radius
static final int solvent_radius- See Also:
-
spec_count
static final int spec_count- See Also:
-
spec_direct
static final int spec_direct- See Also:
-
spec_direct_power
static final int spec_direct_power- See Also:
-
spec_power
static final int spec_power- See Also:
-
spec_reflect
static final int spec_reflect- See Also:
-
specular
static final int specular- See Also:
-
specular_intensity
static final int specular_intensity- See Also:
-
sphere_color
static final int sphere_color- See Also:
-
sphere_mode
static final int sphere_mode- See Also:
-
sphere_point_max_size
static final int sphere_point_max_size- See Also:
-
sphere_point_size
static final int sphere_point_size- See Also:
-
sphere_quality
static final int sphere_quality- See Also:
-
sphere_scale
static final int sphere_scale- See Also:
-
sphere_solvent
static final int sphere_solvent- See Also:
-
sphere_transparency
static final int sphere_transparency- See Also:
-
sphere_use_shader
static final int sphere_use_shader- See Also:
-
spheroid_fill
static final int spheroid_fill- See Also:
-
spheroid_scale
static final int spheroid_scale- See Also:
-
spheroid_smooth
static final int spheroid_smooth- See Also:
-
ss_helix_phi_exclude
static final int ss_helix_phi_exclude- See Also:
-
ss_helix_phi_include
static final int ss_helix_phi_include- See Also:
-
ss_helix_phi_target
static final int ss_helix_phi_target- See Also:
-
ss_helix_psi_exclude
static final int ss_helix_psi_exclude- See Also:
-
ss_helix_psi_include
static final int ss_helix_psi_include- See Also:
-
ss_helix_psi_target
static final int ss_helix_psi_target- See Also:
-
ss_strand_phi_exclude
static final int ss_strand_phi_exclude- See Also:
-
ss_strand_phi_include
static final int ss_strand_phi_include- See Also:
-
ss_strand_phi_target
static final int ss_strand_phi_target- See Also:
-
ss_strand_psi_exclude
static final int ss_strand_psi_exclude- See Also:
-
ss_strand_psi_include
static final int ss_strand_psi_include- See Also:
-
ss_strand_psi_target
static final int ss_strand_psi_target- See Also:
-
state
static final int state- See Also:
-
state_counter_mode
static final int state_counter_mode- See Also:
-
static_singletons
static final int static_singletons- See Also:
-
stereo
static final int stereo- See Also:
-
stereo_angle
static final int stereo_angle- See Also:
-
stereo_double_pump_mono
static final int stereo_double_pump_mono- See Also:
-
stereo_dynamic_strength
static final int stereo_dynamic_strength- See Also:
-
stereo_mode
static final int stereo_mode- See Also:
-
stereo_shift
static final int stereo_shift- See Also:
-
stick_as_cylinders
static final int stick_as_cylinders- See Also:
-
stick_ball
static final int stick_ball- See Also:
-
stick_ball_color
static final int stick_ball_color- See Also:
-
stick_ball_ratio
static final int stick_ball_ratio- See Also:
-
stick_color
static final int stick_color- See Also:
-
stick_debug
static final int stick_debug- See Also:
-
stick_fixed_radius
static final int stick_fixed_radius- See Also:
-
stick_good_geometry
static final int stick_good_geometry- See Also:
-
stick_h_scale
static final int stick_h_scale- See Also:
-
stick_nub
static final int stick_nub- See Also:
-
stick_overlap
static final int stick_overlap- See Also:
-
stick_quality
static final int stick_quality- See Also:
-
stick_radius
static final int stick_radius- See Also:
-
stick_round_nub
static final int stick_round_nub- See Also:
-
stick_transparency
static final int stick_transparency- See Also:
-
stick_use_shader
static final int stick_use_shader- See Also:
-
stick_valence_scale
static final int stick_valence_scale- See Also:
-
stop_on_exceptions
static final int stop_on_exceptions- See Also:
-
surface_best
static final int surface_best- See Also:
-
surface_carve_cutoff
static final int surface_carve_cutoff- See Also:
-
surface_carve_normal_cutoff
static final int surface_carve_normal_cutoff- See Also:
-
surface_carve_selection
static final int surface_carve_selection- See Also:
-
surface_carve_state
static final int surface_carve_state- See Also:
-
surface_cavity_cutoff
static final int surface_cavity_cutoff- See Also:
-
surface_cavity_mode
static final int surface_cavity_mode- See Also:
-
surface_cavity_radius
static final int surface_cavity_radius- See Also:
-
surface_circumscribe
static final int surface_circumscribe- See Also:
-
surface_clear_cutoff
static final int surface_clear_cutoff- See Also:
-
surface_clear_selection
static final int surface_clear_selection- See Also:
-
surface_clear_state
static final int surface_clear_state- See Also:
-
surface_color
static final int surface_color- See Also:
-
surface_color_smoothing
static final int surface_color_smoothing- See Also:
-
surface_color_smoothing_threshold
static final int surface_color_smoothing_threshold- See Also:
-
surface_debug
static final int surface_debug- See Also:
-
surface_miserable
static final int surface_miserable- See Also:
-
surface_mode
static final int surface_mode- See Also:
-
surface_negative_color
static final int surface_negative_color- See Also:
-
surface_negative_visible
static final int surface_negative_visible- See Also:
-
surface_normal
static final int surface_normal- See Also:
-
surface_optimize_subsets
static final int surface_optimize_subsets- See Also:
-
surface_poor
static final int surface_poor- See Also:
-
surface_proximity
static final int surface_proximity- See Also:
-
surface_quality
static final int surface_quality- See Also:
-
surface_ramp_above_mode
static final int surface_ramp_above_mode- See Also:
-
surface_residue_cutoff
static final int surface_residue_cutoff- See Also:
-
surface_solvent
static final int surface_solvent- See Also:
-
surface_trim_cutoff
static final int surface_trim_cutoff- See Also:
-
surface_trim_factor
static final int surface_trim_factor- See Also:
-
surface_type
static final int surface_type- See Also:
-
surface_use_shader
static final int surface_use_shader- See Also:
-
suspend_undo
static final int suspend_undo- See Also:
-
suspend_undo_atom_count
static final int suspend_undo_atom_count- See Also:
-
suspend_updates
static final int suspend_updates- See Also:
-
swap_dsn6_bytes
static final int swap_dsn6_bytes- See Also:
-
sweep_angle
static final int sweep_angle- See Also:
-
sweep_mode
static final int sweep_mode- See Also:
-
sweep_phase
static final int sweep_phase- See Also:
-
sweep_speed
static final int sweep_speed- See Also:
-
test1
static final int test1- See Also:
-
test2
static final int test2- See Also:
-
text
static final int text- See Also:
-
texture_fonts
static final int texture_fonts- See Also:
-
trace_atoms_mode
static final int trace_atoms_mode- See Also:
-
transparency
static final int transparency- See Also:
-
transparency_global_sort
static final int transparency_global_sort- See Also:
-
transparency_mode
static final int transparency_mode- See Also:
-
transparency_picking_mode
static final int transparency_picking_mode- See Also:
-
triangle_max_passes
static final int triangle_max_passes- See Also:
-
trim_dots
static final int trim_dots- See Also:
-
two_sided_lighting
static final int two_sided_lighting- See Also:
-
unused_boolean_def_true
static final int unused_boolean_def_true- See Also:
-
use_display_lists
static final int use_display_lists- See Also:
-
use_shaders
static final int use_shaders- See Also:
-
valence
static final int valence- See Also:
-
valence_mode
static final int valence_mode- See Also:
-
valence_size
static final int valence_size- See Also:
-
validate_object_names
static final int validate_object_names- See Also:
-
virtual_trackball
static final int virtual_trackball- See Also:
-
volume_bit_depth
static final int volume_bit_depth- See Also:
-
volume_color
static final int volume_color- See Also:
-
volume_data_range
static final int volume_data_range- See Also:
-
volume_layers
static final int volume_layers- See Also:
-
wildcard
static final int wildcard- See Also:
-
wizard_prompt_mode
static final int wizard_prompt_mode- See Also:
-
wrap_output
static final int wrap_output- See Also:
-
COLOR_FRONT
static final int COLOR_FRONT- See Also:
-
COLOR_BACK
static final int COLOR_BACK- See Also:
-
COLOR_BLACK
static final int COLOR_BLACK- See Also:
-
colors
private static final int[] colors -
moreColors
-
LEN
static final int LEN- See Also:
-
RESV
static final int RESV- See Also:
-
CUSTOMTYPE
static final int CUSTOMTYPE- See Also:
-
PRIORITY
static final int PRIORITY- See Also:
-
BFACTOR
static final int BFACTOR- See Also:
-
OCCUPANCY
static final int OCCUPANCY- See Also:
-
VDW
static final int VDW- See Also:
-
PARTIALCHARGE
static final int PARTIALCHARGE- See Also:
-
COLOR
static final int COLOR- See Also:
-
ID
static final int ID- See Also:
-
FLAGS
static final int FLAGS- See Also:
-
UNIQUEID
static final int UNIQUEID- See Also:
-
DISCRETESTATE
static final int DISCRETESTATE- See Also:
-
ELECRADIUS
static final int ELECRADIUS- See Also:
-
RANK
static final int RANK- See Also:
-
TEXTTYPE
static final int TEXTTYPE- See Also:
-
CUSTOM
static final int CUSTOM- See Also:
-
LABEL
static final int LABEL- See Also:
-
VISREP
static final int VISREP- See Also:
-
HETATM
static final int HETATM- See Also:
-
BONDED
static final int BONDED- See Also:
-
MASK
static final int MASK- See Also:
-
HBDONOR
static final int HBDONOR- See Also:
-
HBACCEPT
static final int HBACCEPT- See Also:
-
HASSETTING
static final int HASSETTING- See Also:
-
FORMALCHARGE
static final int FORMALCHARGE- See Also:
-
MMSTEREO
static final int MMSTEREO- See Also:
-
CARTOON
static final int CARTOON- See Also:
-
GEOM
static final int GEOM- See Also:
-
VALENCE
static final int VALENCE- See Also:
-
PROTONS
static final int PROTONS- See Also:
-
CHAIN
static final int CHAIN- See Also:
-
SEGI
static final int SEGI- See Also:
-
NAME
static final int NAME- See Also:
-
ELEM
static final int ELEM- See Also:
-
RESI
static final int RESI- See Also:
-
SSTYPE
static final int SSTYPE- See Also:
-
ALTLOC
static final int ALTLOC- See Also:
-
RESN
static final int RESN- See Also:
-
INSCODE
static final int INSCODE- See Also:
-
CHEMFLAG
static final int CHEMFLAG- See Also:
-
PROTEKTED
static final int PROTEKTED- See Also:
-
ANISOU
static final int ANISOU- See Also:
-
HETMASK
static final int HETMASK- See Also:
-
BONMASK
static final int BONMASK- See Also:
-
MASMASK
static final int MASMASK- See Also:
-
HBDMASK
static final int HBDMASK- See Also:
-
HBAMASK
static final int HBAMASK- See Also:
-
SETMASK
static final int SETMASK- See Also:
-
v176
static final int[] v176 -
v177
static final int[] v177 -
v181
static final int[] v181 -
BATOM1
static final int BATOM1- See Also:
-
BATOM2
static final int BATOM2- See Also:
-
BORDER
static final int BORDER- See Also:
-
BID
static final int BID- See Also:
-
BUNIQUEID
static final int BUNIQUEID- See Also:
-
BHASSETTING
static final int BHASSETTING- See Also:
-
v176b
static final int[] v176b -
v177b
static final int[] v177b -
v181b
static final int[] v181b
-
-
Constructor Details
-
PyMOL
PyMOL()
-
-
Method Details
-
getRGB
static int getRGB(int color) -
addColor
-
getDefaultSetting
static float getDefaultSetting(int i, int pymolVersion) All settings that Jmol uses should go here- Parameters:
i
-pymolVersion
-- Returns:
- setting or 0
-
getDefaultSettingPt
static javajs.util.P3 getDefaultSettingPt(int i, int pymolVersion, javajs.util.P3 pt) -
getDefaultSettingS
-
getVArray
static int[] getVArray(int version) -
getVArrayB
static int[] getVArrayB(int version)
-