Package org.jmol.adapter.readers.cif
Class TopoCifParser.TAtom
java.lang.Object
javajs.util.T3
javajs.util.P3
org.jmol.adapter.smarter.Atom
org.jmol.adapter.readers.cif.TopoCifParser.TAtom
- All Implemented Interfaces:
Serializable
,Cloneable
,javajs.api.JSONEncodable
,TopoCifParser.TPoint
- Enclosing class:
- TopoCifParser
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Field Summary
FieldsModifier and TypeFieldDescription(package private) String
(package private) String
(package private) int
private boolean
(package private) String
(package private) String
(package private) TopoCifParser.TNet
(package private) String
(package private) int
private javajs.util.P3
Fields inherited from class org.jmol.adapter.smarter.Atom
altLoc, anisoBorU, atomName, atomSerial, atomSetIndex, atomSite, bfactor, bondingRadius, bsSymmetry, chainID, elementNumber, elementSymbol, foccupancy, formalCharge, group3, index, insertionCode, isHetero, isNegDisorder, partialCharge, radius, sequenceNumber, tensors, typeSymbol, vib
Fields inherited from class javajs.util.T3
x, y, z
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescription(package private) void
private TopoCifParser.TLink
getLinkById
(String linkID) getNet()
(package private) TopoCifParser.TAtom
(package private) boolean
toString()
Returns a string that contains the values of this Tuple3f.Methods inherited from class org.jmol.adapter.smarter.Atom
addTensor, copyTo, getClone, getElementSymbol, isValidSym1, isValidSym2, isValidSymNoCase
Methods inherited from class javajs.util.P3
getUnlikely, new3, newA, newP
Methods inherited from class javajs.util.T3
add, add2, add3, ave, cross, distance, distanceSquared, dot, equals, floatToIntBits, hashCode, length, lengthSquared, normalize, scale, scaleAdd2, scaleT, set, setA, setT, sub, sub2, toJSON
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Field Details
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Constructor Details
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TAtom
TAtom()
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Method Details
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getTClone
TopoCifParser.TAtom getTClone() -
getNet
- Specified by:
getNet
in interfaceTopoCifParser.TPoint
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setAtom
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finalizeAtom
- Throws:
Exception
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getLinkById
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toString
Description copied from class:javajs.util.T3
Returns a string that contains the values of this Tuple3f. The form is (x,y,z).- Overrides:
toString
in classjavajs.util.T3
- Returns:
- the String representation
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